Patch comes from upstream:
  http://git.openssl.org/gitweb/?p=openssl.git;a=commit;h=2198be3483259de374f91e57d247d0fc667aef29
It will be obsoleted when openssl-1.0.0m is available.

--- openssl-1.0.0l/crypto/bn/bn.h.orig	Mon Jan  6 07:00:59 2014
+++ openssl-1.0.0l/crypto/bn/bn.h		Fri Apr 18 13:03:57 2014
@@ -538,6 +538,8 @@
 BIGNUM *BN_mod_sqrt(BIGNUM *ret,
 	const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx);
 
+void	BN_consttime_swap(BN_ULONG swap, BIGNUM *a, BIGNUM *b, int nwords);
+
 /* Deprecated versions */
 #ifndef OPENSSL_NO_DEPRECATED
 BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe,
@@ -759,11 +761,20 @@
 
 #define bn_fix_top(a)		bn_check_top(a)
 
+#define bn_check_size(bn, bits) bn_wcheck_size(bn, ((bits+BN_BITS2-1))/BN_BITS2)
+#define bn_wcheck_size(bn, words) \
+	do { \
+		const BIGNUM *_bnum2 = (bn); \
+		assert(words <= (_bnum2)->dmax && words >= (_bnum2)->top); \
+	} while(0)
+
 #else /* !BN_DEBUG */
 
 #define bn_pollute(a)
 #define bn_check_top(a)
 #define bn_fix_top(a)		bn_correct_top(a)
+#define bn_check_size(bn, bits)
+#define bn_wcheck_size(bn, words)
 
 #endif
 
--- openssl-1.0.0l/crypto/bn/bn_lib.c.orig	Mon Jan  6 07:00:59 2014
+++ openssl-1.0.0l/crypto/bn/bn_lib.c		Fri Apr 18 13:03:08 2014
@@ -843,3 +843,55 @@
 		}
 	return bn_cmp_words(a,b,cl);
 	}
+
+/* 
+ * Constant-time conditional swap of a and b.  
+ * a and b are swapped if condition is not 0.  The code assumes that at most one bit of condition is set.
+ * nwords is the number of words to swap.  The code assumes that at least nwords are allocated in both a and b,
+ * and that no more than nwords are used by either a or b.
+ * a and b cannot be the same number
+ */
+void BN_consttime_swap(BN_ULONG condition, BIGNUM *a, BIGNUM *b, int nwords)
+	{
+	BN_ULONG t;
+	int i;
+
+	bn_wcheck_size(a, nwords);
+	bn_wcheck_size(b, nwords);
+
+	assert(a != b);
+	assert((condition & (condition - 1)) == 0);
+	assert(sizeof(BN_ULONG) >= sizeof(int));
+
+	condition = ((condition - 1) >> (BN_BITS2 - 1)) - 1;
+
+	t = (a->top^b->top) & condition;
+	a->top ^= t;
+	b->top ^= t;
+
+#define BN_CONSTTIME_SWAP(ind) \
+	do { \
+		t = (a->d[ind] ^ b->d[ind]) & condition; \
+		a->d[ind] ^= t; \
+		b->d[ind] ^= t; \
+	} while (0)
+
+
+	switch (nwords) {
+	default:
+		for (i = 10; i < nwords; i++) 
+			BN_CONSTTIME_SWAP(i);
+		/* Fallthrough */
+	case 10: BN_CONSTTIME_SWAP(9); /* Fallthrough */
+	case 9: BN_CONSTTIME_SWAP(8); /* Fallthrough */
+	case 8: BN_CONSTTIME_SWAP(7); /* Fallthrough */
+	case 7: BN_CONSTTIME_SWAP(6); /* Fallthrough */
+	case 6: BN_CONSTTIME_SWAP(5); /* Fallthrough */
+	case 5: BN_CONSTTIME_SWAP(4); /* Fallthrough */
+	case 4: BN_CONSTTIME_SWAP(3); /* Fallthrough */
+	case 3: BN_CONSTTIME_SWAP(2); /* Fallthrough */
+	case 2: BN_CONSTTIME_SWAP(1); /* Fallthrough */
+	case 1: BN_CONSTTIME_SWAP(0);
+	}
+#undef BN_CONSTTIME_SWAP
+}
--- openssl-1.0.0l/crypto/ec/ec2_mult.c.orig	Mon Jan  6 07:00:59 2014
+++ openssl-1.0.0l/crypto/ec/ec2_mult.c	Fri Apr 18 13:00:28 2014
@@ -206,11 +206,15 @@
 	return ret;
 	}
 
+
 /* Computes scalar*point and stores the result in r.
  * point can not equal r.
- * Uses algorithm 2P of
+ * Uses a modified algorithm 2P of
  *     Lopez, J. and Dahab, R.  "Fast multiplication on elliptic curves over 
  *     GF(2^m) without precomputation" (CHES '99, LNCS 1717).
+ *
+ * To protect against side-channel attack the function uses constant time swap,
+ * avoiding conditional branches.
  */
 static int ec_GF2m_montgomery_point_multiply(const EC_GROUP *group, EC_POINT *r, const BIGNUM *scalar,
 	const EC_POINT *point, BN_CTX *ctx)
@@ -244,6 +248,11 @@
 	x2 = &r->X;
 	z2 = &r->Y;
 
+	bn_wexpand(x1, group->field.top);
+	bn_wexpand(z1, group->field.top);
+	bn_wexpand(x2, group->field.top);
+	bn_wexpand(z2, group->field.top);
+
 	if (!BN_GF2m_mod_arr(x1, &point->X, group->poly)) goto err; /* x1 = x */
 	if (!BN_one(z1)) goto err; /* z1 = 1 */
 	if (!group->meth->field_sqr(group, z2, x1, ctx)) goto err; /* z2 = x1^2 = x^2 */
@@ -268,16 +277,12 @@
 		word = scalar->d[i];
 		while (mask)
 			{
-			if (word & mask)
-				{
-				if (!gf2m_Madd(group, &point->X, x1, z1, x2, z2, ctx)) goto err;
-				if (!gf2m_Mdouble(group, x2, z2, ctx)) goto err;
-				}
-			else
-				{
-				if (!gf2m_Madd(group, &point->X, x2, z2, x1, z1, ctx)) goto err;
-				if (!gf2m_Mdouble(group, x1, z1, ctx)) goto err;
-				}
+			BN_consttime_swap(word & mask, x1, x2, group->field.top);
+			BN_consttime_swap(word & mask, z1, z2, group->field.top);
+			if (!gf2m_Madd(group, &point->X, x2, z2, x1, z1, ctx)) goto err;
+			if (!gf2m_Mdouble(group, x1, z1, ctx)) goto err;
+			BN_consttime_swap(word & mask, x1, x2, group->field.top);
+			BN_consttime_swap(word & mask, z1, z2, group->field.top);
 			mask >>= 1;
 			}
 		mask = BN_TBIT;